plotMzDistribution: mZ Distribution Plot of Ms2 Scans

In protViz/rawDiag: Brings Orbitrap Mass Spectrometry Data to Life; Fast and Colorful

mZ Distribution Plot of Ms2 Scans

Description

draws precursor mass vs retention time for each MS2 scan in the raw file.

Usage

plotMzDistribution(x, method = "trellis")

Arguments

x	a data.frame object adhering to the specified criteria for the is.rawDiag function.
method	specifying the plot method 'trellis' | 'violin' | 'overlay'. The default is 'trellis'.

Value

a ggplot object.

Author(s)

Christian Trachsel (2017), Christian Panse (2023)

References

• rawDiag: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.8b00173")},

• rawrr: \Sexpr[results=rd]{tools:::Rd_expr_doi("10.1021/acs.jproteome.0c00866")}

Examples

rawrr::sampleFilePath() |> rawDiag::readRaw() -> S
plotMzDistribution(S)

protViz/rawDiag documentation built on April 29, 2024, 2:25 a.m.