prybakowska/CytoQP: Cytometry data quality control and cleaninig

CytoQP (Quality Pipeline) offers a pipeline to pre-process cytometry data, especially the one acquired on CyTOF/HELIOS instruments. It joins all together tools necessary to perform bead-based normalization, flow rate and signal cleaning, quality control of the files, debarcoding, aggregation and deconvolution, gating and normalization using REF samples. It also extract verifies batch effect and extract features like cell frequencies and median signal intensities.

Getting started

Package details

Bioconductor views Data cleaning Data preprocessing Flow cytometry Large scale studies Mass cytometry Quality control
LicenseGPL (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
prybakowska/CytoQP documentation built on June 28, 2022, 12:36 a.m.