Files in prybakowska/CytoQP
Cytometry data quality control and cleaninig
.Rbuildignore
.Rhistory
.gitignore
CytoQP.Rproj
CytoQP_script.R
DESCRIPTION
LICENSE.md
NAMESPACE
R/bead_normalize.R
R/clean_flow_rate_and_signal.R
R/file_normalization_with_reference_sample.R
R/files_aggregation.R
R/files_debarcoding.R
R/files_gating.R
R/files_quality_check.R
R/meta_data.R
R/plot_batch_effect.R
R/plotting_functions.R
R/split_flowframes.R
R/utils.R
README.md
data/meta_data.rda
man/aggregate_files.Rd
man/aof_scoring.Rd
man/baseline_file.Rd
man/bead_normalize.Rd
man/clean_files.Rd
man/debarcode_files.Rd
man/dot-flow_rate_bin_adapted.Rd
man/dot-gate_out_beads.Rd
man/dot-make_breaks.Rd
man/dot-plot_flowrate.Rd
man/dot-remove_mad_outliers.Rd
man/dot-split_flowFrames.Rd
man/extract_pctgs_msi_per_flowsom.Rd
man/file_outlier_detecion.Rd
man/file_quality_check.Rd
man/find_mass_ch.Rd
man/fsom_aof.Rd
man/gate_intact_cells.Rd
man/gate_live_cells.Rd
man/gate_singlet_cells.Rd
man/grid_arrange_common_legend.Rd
man/meta_data.Rd
man/normalize_REF.Rd
man/plot_2D_scatter_plots.Rd
man/plot_batch.Rd
man/plot_batch_using_freq_msi.Rd
man/plot_marker_quantiles.Rd
man/prepare_data_for_plotting.Rd
man/scaled_aof_score.Rd
man/split_big_flowFrames.Rd
man/test_match_order.Rd
man/train_REF_model.Rd
