file_outlier_detecion: Detects outliers based on sample quality scores

View source: R/files_quality_check.R

file_outlier_detecionR Documentation

Detects outliers based on sample quality scores

Description

Detects outlier files based on sample quality scores, generates plot for outlier and .csv file which indicates which fcs files could be discarded from further analysis.

Usage

file_outlier_detecion(scores, out_dir = NULL, sd)

Arguments

scores

List of scaled scores per acquisition batch or data frame of scaled scores, both generated by scaled_aof_score or aof_scoring function

out_dir

Character, pathway to where the plot and .csv files with quality scores should be saved, default is set to NULL, thus file.path(getwd(), "Quality_Control" will be generated.

sd

How many standard deviation should be use to detect outliers default is set to 3.

Value

Save .RDS and .csv Quality scores for further analysis, and plots and save .png for Quality AOF scores for all files.


prybakowska/CytoQP documentation built on June 28, 2022, 12:36 a.m.