View source: R/files_quality_check.R
file_outlier_detecion | R Documentation |
Detects outlier files based on sample quality scores, generates plot for outlier and .csv file which indicates which fcs files could be discarded from further analysis.
file_outlier_detecion(scores, out_dir = NULL, sd)
scores |
List of scaled scores per acquisition batch or data frame of scaled scores, both generated by scaled_aof_score or aof_scoring function |
out_dir |
Character, pathway to where the plot and .csv files with quality scores should be saved, default is set to NULL, thus file.path(getwd(), "Quality_Control" will be generated. |
sd |
How many standard deviation should be use to detect outliers default is set to 3. |
Save .RDS and .csv Quality scores for further analysis, and plots and save .png for Quality AOF scores for all files.
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