Man pages for pygmyperch/melfuR
A collection of ugly R functions for analysis of SNP and spatial data.
| clean_vcf_INFO | Parse and clean-up INFO Fields in a VCF File |
| DelphinusXY | Sample locations of common dolphins in Australia and New... |
| diversity_stats | This function calculates basic genetic diversity stats from a... |
| expand_pop2ind | Expand Population-Level Metadata to Individual-Level Data... |
| extract_tri | extract upper or lower triangle from a square matrix |
| HWE_filter | A wrapper function for the hw.test function from pegas to... |
| impute_genotypes | impute missing genotypes based on pop structure characterised... |
| manage_files | Manage File Operations |
| MDB_cols | Custom color palette based on the Murray-Darling Basin... |
| missing_data | This function calculates the percent of missing genotypes for... |
| percent_poly | This function calculates the percent polymorphic loci per... |
| polarise_ancestral_vcf | Polarise a VCF File setting the (supplied) Ancestral Allele... |
| rainbow.env | Environmental data for Melanotaenia fluviatilis sampling... |
| rainbow.genind | ddRAD data from Melanotaenia fluviatilis in the... |
| sf2KML | Convert Simple Features to KML |
| sort_alleles | Sort Alleles in genlight or genind Objects as Major/Minor |
| subset_snps | This function subsets a structure file based on a list of... |
| viamaris | calculate pairwise oceanic distances among sampling locations |
| view_colors | View Color Palette |
| write_list_to_excel | Write a List of Data Frames to an Excel File |
