clean_vcf_INFO: Parse and clean-up INFO Fields in a VCF File
In pygmyperch/melfuR: A collection of ugly R functions for analysis of SNP and spatial data.
View source: R/clean_vcf_INFO.R
clean_vcf_INFO R Documentation
Parse and clean-up INFO Fields in a VCF File
Description
This function reads a VCF file, processes the INFO fields to remove any fields that are not consistently present
across all records, and outputs a cleaned VCF file with "_clean" appended to the input file name before the suffix.
Usage
clean_vcf_INFO(vcffile)
Arguments
vcffile
A character string specifying the path to the input VCF file.
Value
Writes a cleaned VCF file to the specified or default path.
Examples
# Assume you have a VCF file "my_input.vcf" in your working directory
clean_vcf_INFO("my_input.vcf")
pygmyperch/melfuR documentation built on Aug. 26, 2024, 12:48 a.m.
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View source: R/clean_vcf_INFO.R
| clean_vcf_INFO | R Documentation |
Parse and clean-up INFO Fields in a VCF File
Description
This function reads a VCF file, processes the INFO fields to remove any fields that are not consistently present across all records, and outputs a cleaned VCF file with "_clean" appended to the input file name before the suffix.
Usage
clean_vcf_INFO(vcffile)
Arguments
vcffile |
A character string specifying the path to the input VCF file. |
Value
Writes a cleaned VCF file to the specified or default path.
Examples
# Assume you have a VCF file "my_input.vcf" in your working directory
clean_vcf_INFO("my_input.vcf")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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