Files in quicklizard99/cheddar

Analysis and Visualisation of Ecological Communities

.Rbuildignore

.Rinstignore

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

R/aggregate.R R/chains.R R/community.R R/community_MN.R R/community_collection.R R/community_trophic_links.R R/config.R R/graph.R R/graph_nodes.R R/graph_trophic_links.R R/graph_util.R R/util.R README.md

bin/check_cheddar_mem.sh

bin/minimise_diet_gaps.R bin/print_chains.R bin/shortest_paths.R bin/trophic_chains.R bin/write_for_rob.R

build.sh

data/Benguela.RData

data/BroadstoneStream.RData

data/ChesapeakeBay.RData

data/Millstream.RData

data/SkipwithPond.RData

data/TL84.RData

data/TL86.RData

data/YthanEstuary.RData

data/pHWebs.RData

inst/CITATION

man/AggregateCommunities.Rd man/ApplyByClass.Rd man/Benguela.Rd man/BodyMassB.Rd man/BroadstoneStream.Rd man/CP.Rd man/CPS.Rd man/ChesapeakeBay.Rd man/CollectionApply.Rd man/CollectionCPS.Rd man/CollectionNPS.Rd man/CollectionTLPS.Rd man/Community.Rd man/CommunityCollection.Rd man/CommunityHas.Rd man/CommunityPropertyNames.Rd man/Degree.Rd man/DegreeDistribution.Rd man/Intervality.Rd man/IsCannibal.Rd man/LinearRegressionByClass.Rd man/LoadCollection.Rd man/LoadCommunity.Rd man/LumpNodes.Rd man/LumpTrophicSpecies.Rd man/Millstream.Rd man/NP.Rd man/NPS.Rd man/NodeConnectivity.Rd man/NodeMNUtilities.Rd man/NodeNameIndices.Rd man/NodePropertyNames.Rd man/NumberOfNodes.Rd man/NumberOfTrophicLinks.Rd man/NvMConvexHull.Rd man/NvMLinearRegressions.Rd man/NvMTriTrophicStatistics.Rd man/NvMTriTrophicTable.Rd man/Omnivory.Rd man/OrderCollection.Rd man/OrderCommunity.Rd man/PlotAuppervAlower.Rd man/PlotCircularWeb.Rd man/PlotHelpers.Rd man/PlotNPS.Rd man/PlotNPSDistribution.Rd man/PlotPyramid.Rd man/PlotRankNPS.Rd man/PlotSpectrum.Rd man/PlotTLPS.Rd man/PlotWagonWheel.Rd man/PlotWebByLevel.Rd man/PredationMatrix.Rd man/PredationMatrixToLinks.Rd man/QuantitativeDescriptors.Rd man/RemoveCannibalisticLinks.Rd man/RemoveIsolatedNodes.Rd man/RemoveNodes.Rd man/ResourceLargerThanConsumer.Rd man/ResourcesByNode.Rd man/ShortestPaths.Rd man/SiteBySpeciesMatrix.Rd man/SkipwithPond.Rd man/TL84.Rd man/TLP.Rd man/TLPS.Rd man/ThreeNodeChains.Rd man/TrophicChains.Rd man/TrophicChainsStats.Rd man/TrophicLevels.Rd man/TrophicLinkPropertyNames.Rd man/TrophicSimilarity.Rd man/TrophicSpecies.Rd man/YthanEstuary.Rd man/cheddar.Rd man/pHWebs.Rd man/subset.CommunityCollection.Rd release_history.md

src/.gitignore

src/anneal.cpp

src/cheddar.cpp

src/cheddar.h

src/cheddar_exception.h

src/shortest_paths.cpp

src/trophic_chains.cpp

tests/community_MN_test.R tests/community_collection_test.R tests/community_test.R tests/community_trophic_links_test.R tests/graph_tests.R tests/run.R tests/util_test.R

vignettes/CheddarQuickstart.Rnw

vignettes/Collections.Rnw

vignettes/Community.Rnw

vignettes/Grassland1994/communities/Plot1/nodes.csv

vignettes/Grassland1994/communities/Plot1/properties.csv

vignettes/Grassland1994/communities/Plot1/trophic.links.csv

vignettes/Grassland1994/communities/Plot2/nodes.csv

vignettes/Grassland1994/communities/Plot2/properties.csv

vignettes/Grassland1994/communities/Plot2/trophic.links.csv

vignettes/Grassland1994/communities/Plot3/nodes.csv

vignettes/Grassland1994/communities/Plot3/properties.csv

vignettes/Grassland1994/communities/Plot3/trophic.links.csv

vignettes/ImportExport.Rnw

vignettes/PlotsAndStats.Rnw

vignettes/Stream12/nodes.csv

vignettes/Stream12/properties.csv

vignettes/Stream12/trophic.links.csv

vignettes/cheddar.bib

website/.gitignore

website/README.md

website/cheddar-simple/static/css/main.css

website/cheddar-simple/static/css/pygment.css

website/cheddar-simple/static/css/reset.css

website/cheddar-simple/static/css/typogrify.css

website/cheddar-simple/static/css/wide.css

website/cheddar-simple/static/images/icons/aboutme.png

website/cheddar-simple/static/images/icons/bitbucket.png

website/cheddar-simple/static/images/icons/delicious.png

website/cheddar-simple/static/images/icons/facebook.png

website/cheddar-simple/static/images/icons/github.png

website/cheddar-simple/static/images/icons/gitorious.png

website/cheddar-simple/static/images/icons/gittip.png

website/cheddar-simple/static/images/icons/google-groups.png

website/cheddar-simple/static/images/icons/google-plus.png

website/cheddar-simple/static/images/icons/hackernews.png

website/cheddar-simple/static/images/icons/lastfm.png

website/cheddar-simple/static/images/icons/linkedin.png

website/cheddar-simple/static/images/icons/reddit.png

website/cheddar-simple/static/images/icons/rss.png

website/cheddar-simple/static/images/icons/slideshare.png

website/cheddar-simple/static/images/icons/songkick.png

website/cheddar-simple/static/images/icons/speakerdeck.png

website/cheddar-simple/static/images/icons/twitter.png

website/cheddar-simple/static/images/icons/vimeo.png

website/cheddar-simple/static/images/icons/youtube.png

website/cheddar-simple/templates/analytics.html

website/cheddar-simple/templates/archives.html

website/cheddar-simple/templates/article.html

website/cheddar-simple/templates/article_infos.html

website/cheddar-simple/templates/author.html

website/cheddar-simple/templates/authors.html

website/cheddar-simple/templates/base.html

website/cheddar-simple/templates/category.html

website/cheddar-simple/templates/comments.html

website/cheddar-simple/templates/disqus_script.html

website/cheddar-simple/templates/github.html

website/cheddar-simple/templates/index.html

website/cheddar-simple/templates/page.html

website/cheddar-simple/templates/piwik.html

website/cheddar-simple/templates/tag.html

website/cheddar-simple/templates/taglist.html

website/cheddar-simple/templates/translations.html

website/cheddar-simple/templates/twitter.html

website/examples/create_methods_page.py

website/examples/examples.csv

website/examples/methods.md

website/examples/references.csv

website/examples/render_methods_page.py

website/examples/run_examples.R

website/examples/unicode_csv.py

website/index_example.R

website/pages/Makefile

website/pages/content/news/2012-09-24-woodward-el-al.md website/pages/content/news/2012-10-10-ogorman-et-al.md website/pages/content/news/2012-11-24-paper-in-mee.md website/pages/content/news/2012-11-28-cheddar-at-bes.md website/pages/content/news/2013-01-22-cheddar-0.1-620.md website/pages/content/news/2013-03-22-cheddar-0.1-622.md website/pages/content/news/2013-04-20-clitherow-et-al.md website/pages/content/news/2013-07-05-ledger-el-al.md website/pages/content/news/2013-09-12-hudson-and-reuman.md website/pages/content/news/2013-11-07-cheddar-0.1-623.md website/pages/content/news/2013-12-01-preston-el-al.md website/pages/content/news/2013-12-03-cheddar-0.1-624.md website/pages/content/news/2014-02-23-mclaughlin-et-al.md website/pages/content/news/2014-02-26-cheddar-0.1-625.md website/pages/content/news/2015-04-16-cheddar-0.1-629.md

website/pages/content/news/PlotWagonWheel1.png

website/pages/content/news/PlotWagonWheel2.png

website/pages/content/pages/cheddar-example.png

website/pages/content/pages/index.md website/pages/content/pages/install.md

website/pages/develop_server.sh

website/pages/pelicanconf.py

website/pages/publishconf.py

website/requirements.txt

quicklizard99/cheddar documentation built on Aug. 25, 2022, 5:01 a.m.