add_custom_entrez: Adds custom Entrez IDs and optional overwriting species

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Adds custom Entrez IDs and optional overwriting species

Description

Adds custom Entrez IDs and optional overwriting species

Usage

add_custom_entrez(acc_lookup, entrez, acc_type)

Arguments

acc_lookup	A data frame of protein accession lookups
entrez	Character string(s) to the name(s) of entrez file(s) with prepended directory path. At the NULL default, a convenience lookup is available for species among c("human", "mouse", "rat"). For other species, users need to provide the file path(s) and name(s) for the lookup table(s). See also Uni2Entrez and Ref2Entrez for preparing custom entrez files.
acc_type	The type of protein accessions

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.