add_pepseqmod: Adds the 'pep_seq_mod' field to PSMs.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
add_pepseqmod R Documentation
Adds the pep_seq_mod field to PSMs.
Description
For mzion.
Usage
add_pepseqmod(df, use_lowercase_aa = TRUE, purge_phosphodata = TRUE)
Arguments
df
A data frame containing the PSM table from database searches.
use_lowercase_aa
Logical; if TRUE, modifications in amino acid
residues will be abbreviated with lower-case and/or ^_~. See the
table below for details. The default is TRUE.
purge_phosphodata
Logical; if TRUE and phosphorylation present as
variable modification(s), entries without phosphorylation will be removed.
The default is TRUE.
qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.
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| add_pepseqmod | R Documentation |
Adds the pep_seq_mod field to PSMs.
Description
For mzion.
Usage
add_pepseqmod(df, use_lowercase_aa = TRUE, purge_phosphodata = TRUE)
Arguments
df |
A data frame containing the PSM table from database searches. |
use_lowercase_aa |
Logical; if TRUE, modifications in amino acid
residues will be abbreviated with lower-case and/or |
purge_phosphodata |
Logical; if TRUE and phosphorylation present as variable modification(s), entries without phosphorylation will be removed. The default is TRUE. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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