add_msgf_pepseqmod: Adds the 'pep_seq_mod' field to PSMs.
In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data
add_msgf_pepseqmod R Documentation
Adds the pep_seq_mod field to PSMs.
Description
For MSGF.
Usage
add_msgf_pepseqmod(
df = NULL,
use_lowercase_aa = TRUE,
purge_phosphodata = FALSE
)
Arguments
df
PSM data.
use_lowercase_aa
Logical; if TRUE, modifications in amino acid residues
will be abbreviated with lower-case and/or ^_~. See the table below
for details. The default is TRUE.
purge_phosphodata
Logical; if TRUE and phosphorylation present as
variable modification(s), entries without phosphorylation will be removed.
The default is TRUE.
qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.
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| add_msgf_pepseqmod | R Documentation |
Adds the pep_seq_mod field to PSMs.
Description
For MSGF.
Usage
add_msgf_pepseqmod(
df = NULL,
use_lowercase_aa = TRUE,
purge_phosphodata = FALSE
)
Arguments
df |
PSM data. |
use_lowercase_aa |
Logical; if TRUE, modifications in amino acid residues
will be abbreviated with lower-case and/or |
purge_phosphodata |
Logical; if TRUE and phosphorylation present as variable modification(s), entries without phosphorylation will be removed. The default is TRUE. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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