annot_from_to: Helper to map 'SYMBOL' to 'ENTREZID'

annot_from_toR Documentation

Helper to map 'SYMBOL' to 'ENTREZID'

Description

Helper to map 'SYMBOL' to 'ENTREZID'

Usage

annot_from_to(
  abbr_species = "Hs",
  keys = NULL,
  from = "SYMBOL",
  to = "ENTREZID"
)

Arguments

abbr_species

Two-letter character string; the abbreviated name of species used with org.Xx.eg.db. The value of abbr_species will be determined automatically if the species is in one of c("human", "mouse", "rat"). Otherwise, for example, users need to provide abbr_species = Ce for fetching the org.Ce.eg.db package in the name space of proteoQ.

For analysis against gene ontology and Molecular Signatures, the argument is further applied to differentiate the same biological terms under different species; e.g., GO~0072686 mitotic spindle becomes hs_GO~0072686 mitotic spindle for human and mm_GO~0072686 mitotic spindle for mouse.

keys

Identifier such as gene names.

from

the type of keys

to

the type of target IDs


qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.