annot_from_to: Helper to map 'SYMBOL' to 'ENTREZID'

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Helper to map 'SYMBOL' to 'ENTREZID'

Description

Helper to map 'SYMBOL' to 'ENTREZID'

Usage

annot_from_to(
  abbr_species = "Hs",
  keys = NULL,
  from = "SYMBOL",
  to = "ENTREZID"
)

Arguments

abbr_species	Two-letter character string; the abbreviated name of species used with org.Xx.eg.db. The value of abbr_species will be determined automatically if the species is in one of c("human", "mouse", "rat"). Otherwise, for example, users need to provide abbr_species = Ce for fetching the org.Ce.eg.db package in the name space of proteoQ. For analysis against gene ontology and Molecular Signatures, the argument is further applied to differentiate the same biological terms under different species; e.g., GO~0072686 mitotic spindle becomes hs_GO~0072686 mitotic spindle for human and mm_GO~0072686 mitotic spindle for mouse.
keys	Identifier such as gene names.
from	the type of keys
to	the type of target IDs

qzhang503/proteoQ documentation built on March 16, 2024, 5:27 a.m.