View source: R/SSplotRecdevs.R
SSplotRecdevs | R Documentation |
Plot recruitment deviations and associated quantities including derived measures related to bias adjustment.
SSplotRecdevs(
replist,
subplots = 1:3,
plot = TRUE,
print = FALSE,
add = FALSE,
uncertainty = TRUE,
minyr = -Inf,
maxyr = Inf,
forecastplot = FALSE,
col1 = "black",
col2 = "blue",
col3 = "green3",
col4 = "red",
legendloc = "topleft",
labels = c("Year", "Asymptotic standard error estimate", "Log recruitment deviation",
"Bias adjustment fraction, 1 - stddev^2 / sigmaR^2"),
pwidth = 6.5,
pheight = 5,
punits = "in",
res = 300,
ptsize = 10,
cex.main = 1,
plotdir = "default",
verbose = TRUE
)
replist |
A list object created by |
subplots |
vector controlling which subplots to create |
plot |
Plot to active plot device? |
print |
Print to PNG files? |
add |
add to existing plot (not yet implemented) |
uncertainty |
include plots showing uncertainty? |
minyr |
optional input for minimum year to show in plots |
maxyr |
optional input for maximum year to show in plots |
forecastplot |
include points from forecast years? |
col1 |
first color used |
col2 |
second color used |
col3 |
third color used |
col4 |
fourth color used |
legendloc |
Location of legend. Either a string like "topleft" or a
vector of two numeric values representing the fraction of the maximum in
the x and y dimensions, respectively. See |
labels |
Vector of labels for plots (titles and axis labels). |
pwidth |
Default width of plots printed to files in units of
|
pheight |
Height of plots printed to png files in units of |
punits |
Units for |
res |
Resolution of plots printed to files.
The default is |
ptsize |
Point size for plotted text in plots printed to files (see
|
cex.main |
Character expansion for plot titles.
The default is |
plotdir |
Directory where PNG files will be written. |
verbose |
A logical value specifying if output should be printed to the screen. |
Ian Taylor, Ian Stewart
SS_plots()
, SS_fitbiasramp()
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