Clustering_tSNE: perform tSNE clustering

In rafysta/rafysta: Private Function Packages

Description

Perofrming tSNE clustering using PCA result as input

Usage

Clustering_tSNE(DATA, pca_use = 1:10, seed = 1, perplexity = 20,
  theta = 0, max_iter = 1000)

Arguments

DATA	pca result or data matrix
pca_use	which principal component will be use for tSNE
seed	seed
perplexity	perplexity. this value cannot exceed (nrow(mat) -1)/3
theta	0.0 is original tSNE. 0.5 is quick version
max_iter	maximum number of iteration

Value

tsne result object

Examples

tsne = Clustering_tSNE(pca, pca_use=1:10, perplexity=20)

rafysta/rafysta documentation built on May 3, 2019, 3:21 p.m.