NormalizeMatrix: Normalize RNA-seq matrices
In rafysta/rafysta: Private Function Packages
Description
Usage
Arguments
Value
Examples
Description
This function normalize single cell RNA-seq matrices with several different method
Usage
1
NormalizeMatrix(mat, method = "scran", min_size = 10)
Arguments
mat
single cell RNA-seq matrices
method
method for normalize. log, quantile, rle, scran(default), cpm, tmm, tpm, upperquantile, downsample, center
min_size
if run scran, minimum size of quick clustering. default=10
Value
normalized matrices
Examples
1
NormalizeMatrix(mat, method="scran", min_size=10)
rafysta/rafysta documentation built on May 3, 2019, 3:21 p.m.
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Description Usage Arguments Value Examples
Description
This function normalize single cell RNA-seq matrices with several different method
Usage
1 | NormalizeMatrix(mat, method = "scran", min_size = 10)
|
Arguments
mat |
single cell RNA-seq matrices |
method |
method for normalize. log, quantile, rle, scran(default), cpm, tmm, tpm, upperquantile, downsample, center |
min_size |
if run scran, minimum size of quick clustering. default=10 |
Value
normalized matrices
Examples
1 | NormalizeMatrix(mat, method="scran", min_size=10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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