plot_SIMILR: make graph of SIMILR result

In rafysta/rafysta: Private Function Packages

Description

make graph for SIMILR results

Usage

plot_SIMILR(sim, file = NULL, target = 1, legend_file = NULL,
  title = NULL, cell_table = NULL, color_by = NULL,
  shape_by = NULL, size_by = NULL, width = 5, height = 5,
  alpha = 0.5, pallete = NULL, option = NULL, le_width = NULL,
  le_height = 4)

Arguments

sim	Clustering_SIMILR result object
file	graph image
target	which rank of SIMILR reulst will be output (default : best result)
legend_file	output of legend graph
title	title of graph
cell_table	data frame having cell informations. 1 of column should be "Cell". Other column could be use for specify coloring, shape, size information.
color_by	specify color target column
shape_by	specify shape target column
size_by	specify size target column
width	default = 5
height	default = 5
pallete	color vectors
option	other options for ggplot drawing
Xcom	Specify principal component at X-axis. (Default = 1)
Ycom	Specify principal component at Y-axis. (Default = 2)

Value

graphs

Examples

plot_SIMILR(sim, file="output.png")

rafysta/rafysta documentation built on May 3, 2019, 3:21 p.m.