plot_PCA: plot PCA result

In rafysta/rafysta: Private Function Packages

Description

Custom PCA output using output from PCA

Usage

plot_PCA(pca, file = NULL, legend_file = NULL, title = NULL,
  Xcom = 1, Ycom = 2, cell_table = NULL, color_by = NULL,
  shape_by = NULL, size_by = NULL, width = 5, height = 5,
  alpha = 0.5, pallete = NULL, option = NULL, le_width = NULL,
  le_height = 4)

Arguments

pca	output from Clustering_PCA function
file	graph image
legend_file	output of legend graph
title	title of graph
Xcom	Specify principal component at X-axis. (Default = 1)
Ycom	Specify principal component at Y-axis. (Default = 2)
cell_table	data frame having cell informations. 1 of column should be "Cell". Other column could be use for specify coloring, shape, size information.
color_by	specify color target column
shape_by	specify shape target column
size_by	specify size target column
width	default = 5
height	default = 5
pallete	color vectors
option	other options for ggplot drawing

Value

graph file

Examples

plot_PCA(pca, file="output.png")

rafysta/rafysta documentation built on May 3, 2019, 3:21 p.m.