plot_tSNE: plot tSNE result

In rafysta/rafysta: Private Function Packages

Description

plotting tSNE results

Usage

plot_tSNE(tsne, file = NULL, legend_file = NULL, title = NULL,
  cell_table = NULL, color_by = NULL, shape_by = NULL,
  size_by = NULL, width = 5, height = 5, alpha = 0.5,
  pallete = NULL, option = NULL, le_width = NULL, le_height = 4)

Arguments

tsne	result from Clustering_tSNE
file	graph image
legend_file	output of legend graph
title	title of graph
cell_table	data frame having cell informations. 1 of column should be "Cell". Other column could be use for specify coloring, shape, size information.
color_by	specify color target column
shape_by	specify shape target column
size_by	specify size target column
width	default = 5
height	default = 5
pallete	color vectors
option	other options for ggplot drawing

Value

graph of tSNE result

Examples

plot_tSNE(tsne, file="output.png")

rafysta/rafysta documentation built on May 3, 2019, 3:21 p.m.