Man pages for raguirreg/DeconCell
DeconCell
| cell.proportions | Cell Proportion data Example cell proportions of circulating... |
| count.table | Expression data Example RNA-seq data from 5 healthy... |
| dCell.evaluate | Evaluate percentage of coeficient used in a model... |
| dCell.expProcessing | Pre-process RNASeq based expression data.... |
| dCell.exp.trimming | Trims a dCell.exp matrix for only dCell genes 'dCell.predict'... |
| dCell.geneList | DeconCell gene list Vector of gene names (ENSEMBL... |
| dCell.models | DeconCell models Lists fo 33 lists containing the... |
| dCell.names | Cell subpopulation names Code and names for the predicted... |
| dCell.predict | Predict all available cell subpopoulation in DeconCell... |
| dCell.predict.single | Predict a single cell subpopoulation using a DeconCell model... |
| dCell.run | Run Decon-cell to generate new gene signature and... |
| dCell.run.single | Run DeconCell to generate new gene signature for a single... |
| get.marker.genes | Wrapper function for glmnet 'get.marker.genes' |
| glmnet.wrapper | Wrapper function for glmnet 'glmnet.wrapper' |
