dCell.run.single: Run DeconCell to generate new gene signature for a single...
In raguirreg/DeconCell: DeconCell
View source: R/dCell_functions.R
Description
Run DeconCell to generate new gene signature for a single cell type.
dCell.run.single Runs dCell.run to generate gene expression signatures to predict cell proportions of bulk tissues
Usage
1
2
dCell.run.single(exp, i.ct.proportions, n.samples.train,
n.samples.test = NULL, iterations = 10)
Arguments
exp
A matrix or data.frame of normalized (by gene lenght and library size (RPKM, TMM, TPM...)) and scaled expression data, samples by columns and genes by row. Preferably comming from dCell.expProcessing.
i.ct.proportions
A matrix or data.frame of cell proportions within each bulk RNA-Seq sample. Samples by row and cell types by column.
raguirreg/DeconCell documentation built on May 29, 2019, 8:05 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/dCell_functions.R
Description
Run DeconCell to generate new gene signature for a single cell type.
dCell.run.single Runs dCell.run to generate gene expression signatures to predict cell proportions of bulk tissues
Usage
1 2 | dCell.run.single(exp, i.ct.proportions, n.samples.train,
n.samples.test = NULL, iterations = 10)
|
Arguments
exp |
A matrix or data.frame of normalized (by gene lenght and library size (RPKM, TMM, TPM...)) and scaled expression data, samples by columns and genes by row. Preferably comming from |
i.ct.proportions |
A matrix or data.frame of cell proportions within each bulk RNA-Seq sample. Samples by row and cell types by column. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.