dCell.predict.single: Predict a single cell subpopoulation using a DeconCell model...
In raguirreg/DeconCell: DeconCell
Description
Usage
Arguments
Value
Examples
View source: R/dCell_functions.R
Description
Predict a single cell subpopoulation using a DeconCell model
dCell.predict.single Predicts cell proportions of one out of the 32 cell subpopulations using the DeconCell models.
Usage
1
dCell.predict.single(dCell.exp, dCell.model, res.type = "median")
Arguments
dCell.exp
A table of normalized and scaled expression, samples by columns and genes by row. Preferably comming from dCell.expProcessing.
res.type
Whether the prediction per DeconCell models should be sumarized by either median or mean.
dCell.models
A list containing the DeconCell models.
Value
A vector of predicted cell proportions for a given set of models.
Mean of percentage of coeficients covered given
Examples
1
2
3
4
data(dCell.models)
x <- dCell.predict.single(dCell.exp, dCell.model=dCell.models[[1]])
x$Predicted
x$Prediction.eval
raguirreg/DeconCell documentation built on May 29, 2019, 8:05 a.m.
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Description Usage Arguments Value Examples
View source: R/dCell_functions.R
Description
Predict a single cell subpopoulation using a DeconCell model
dCell.predict.single Predicts cell proportions of one out of the 32 cell subpopulations using the DeconCell models.
Usage
1 | dCell.predict.single(dCell.exp, dCell.model, res.type = "median")
|
Arguments
dCell.exp |
A table of normalized and scaled expression, samples by columns and genes by row. Preferably comming from |
res.type |
Whether the prediction per DeconCell models should be sumarized by either |
dCell.models |
A list containing the DeconCell models. |
Value
A vector of predicted cell proportions for a given set of models.
Mean of percentage of coeficients covered given
Examples
1 2 3 4 | data(dCell.models)
x <- dCell.predict.single(dCell.exp, dCell.model=dCell.models[[1]])
x$Predicted
x$Prediction.eval
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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