dCell.predict: Predict all available cell subpopoulation in DeconCell...

In raguirreg/DeconCell: DeconCell

Description

Predict all available cell subpopoulation in DeconCell dCell.predict Runs dCell.predict

Usage

dCell.predict(dCell.exp, dCell.models, res.type = "median",
  custom = FALSE)

Arguments

dCell.exp	A matrix or data.frame of normalized (by gene lenght and library size (RPKM, TMM, TPM...)) and scaled expression data, samples by columns and genes by row. Preferably comming from dCell.expProcessing.
dCell.models	A list containing the DeconCell models.
res.type	Whether the prediction per DeconCell models should be sumarized by either median or mean.

Value

A matrix of predicted cell proportions for all available cell subpopoulation in DeconCell.

A vector containing the performance evaluation of all available models.

Examples

data(dCell.models)
x <- dCell.predict(dCell.exp, dCell.models=dCell.models)
x$dCell.prediction
x$Evaluation

raguirreg/DeconCell documentation built on May 29, 2019, 8:05 a.m.