analyseOutput: Compute network statistics
In ramellose/NetworkUtils: Network analysis utitilities for "From hairballs to hypotheses: biological insights from microbial networks"

Compute multiple statistics for tool outputs.

1 2	analyseOutput(network, klemmadj, tool, setname, x, n, absolute = TRUE, alldata = NULL)

`network`	list of networks for one tool
`klemmadj`	list of Klemm matrices
`tool`	toolname
`setname`	name of simulation
`x`	vector specificying environmental strength or removed species
`n`	number of replicates
`absolute`	if true: only check for edge presence, not matching sign
`alldata`	list of datasets with simulated counts
`mode`	"env" or "abundance", env takes environmental strength into account while "abundance" includes species removal

Calculates precision, sensitivity, specificity, assortativity, degree, transitivity, AUC and scale-freeness for tool output.

List of dataframes with results per point of x

ramellose/NetworkUtils documentation built on May 26, 2019, 12:34 a.m.

ramellose/NetworkUtils index

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