envGrowthChanges: Generate growth changes induced by environment

In ramellose/NetworkUtils: Network analysis utitilities for "From hairballs to hypotheses: biological insights from microbial networks"

Description

Generate a matrix of growth changes for different environmental conditions. This vector can be supplied to generateDataSet to introduce environmental perturbation in the dataset. Note that the effect of environmental parameters is already summed, so only one growth change is provided per species per condition.

Usage

envGrowthChanges(species, env.factors = 2, conditions = 2, strength)

Arguments

species	Number of species
env.factors	Number of environmental factors
conditions	Number of environmental conditions
strength	Strength of environmental factors

Value

Matrix of growth changes, 1 column per condition.

Examples

klemm = generateA(N=10, type="klemm", c=0.5)
env = envGrowthChanges(species = 10, env.factors=2, conditions=2, strength=0.5)
dataset = generateDataSet(100, klemm, env.matrix = env, perturb.count = c(50, 50))

ramellose/NetworkUtils documentation built on May 26, 2019, 12:34 a.m.