readSpar: Read SparCC outputs
In ramellose/NetworkUtils: Network analysis utitilities for "From hairballs to hypotheses: biological insights from microbial networks"
Description
Usage
Arguments
Details
Value
Description
Reads SparCC .txt outputs and converts to adjacency matrix.
Usage
1
Arguments
n
number of replicates
x
vector specificying environmental strength or removed species
setname
name of simulation
alldata
list of datasets with simulated counts
klemmadj
list of Klemm matrices
Details
SparCC bash calls output p-values that can be used to compute adjacency matrices.
Value
nothing, but writes .txt files to current directory
ramellose/NetworkUtils documentation built on May 26, 2019, 12:34 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
Description
Reads SparCC .txt outputs and converts to adjacency matrix.
Usage
1 |
Arguments
n |
number of replicates |
x |
vector specificying environmental strength or removed species |
setname |
name of simulation |
alldata |
list of datasets with simulated counts |
klemmadj |
list of Klemm matrices |
Details
SparCC bash calls output p-values that can be used to compute adjacency matrices.
Value
nothing, but writes .txt files to current directory
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.