plotSeries: Plot statistics

In ramellose/NetworkUtils: Network analysis utitilities for "From hairballs to hypotheses: biological insights from microbial networks"

Description

Produces ggplot with specified statistic, coloured by tool.

Usage

plotSeries(results, klemmspecs, toolnames, x, statistic, axis,
  mode = "linear", legend = TRUE, colours)

Arguments

results	output statistics per tool
klemmspecs	output statistics for Klemm-Eguiluz matrices
toolnames	list of toolnames
x	vector specificying environmental strength or removed species
statistic	statistic to be plotted
axis	x axis title
mode	"linear" or "quadratic" for trend line
legend	if TRUE, show legend
colours	vector specificying codes in hex

Details

Requires the output statistics file, not a network file. Statistics that can be plotted are: "Precision", "Sensitivity", "Specificity", "AUC", "Transitivity", "Degree", "Scale-freeness"

Value

ggplot object

ramellose/NetworkUtils documentation built on May 26, 2019, 12:34 a.m.