readCoNet: Read CoNet outputs

In ramellose/NetworkUtils: Network analysis utitilities for "From hairballs to hypotheses: biological insights from microbial networks"

Description

Reads CoNet .txt outputs and converts to adjacency matrix.

Usage

readCoNet(name = "brown", mode = "env", x = seq(from = 0, to = 50, by =
  5), n = 10, alldata = alldata, setname, tool = tool, klemmadj, wdir)

Arguments

name	name of p-value merge, "brown" or "fisher"
x	vector specificying environmental strength or removed species
n	number of replicates
alldata	list of datasets with simulated counts
setname	name of simulation
tool	toolname, pref "CoNetBrown" or "CoNetFisher"
klemmadj	list of Klemm matrices

Details

CoNet bash calls output a text file that can be used to compute adjacency matrices. This function parses the text file.

Value

nothing, but writes .txt files to current directory

ramellose/NetworkUtils documentation built on May 26, 2019, 12:34 a.m.