Man pages for rayanramin/RamPack
Ramin's Package
| clear | clear the environment |
| DEResult_table | DESeq2 result table |
| Detect_Context | Detect sequence context (stranded) |
| detect_context_stranded | Detect sequence context (stranded) |
| duplicated_all | duplicated_all |
| ede | ede |
| get_loop_seq | Get hairpin loop sequence |
| get_mut_context_matrix | Get Mutation Context Matrix |
| grapes-nin-grapes | nin = not in |
| mapacross | Mapacross, similar to Mike Lawrence's Matlab function |
| melt | melt |
| mut_96_UI | Count mutation occurrences in the provided contexts |
| mut_matrix_UI | Make mutation count matrix |
| NDC | Normalized Differntial Coverage |
| plot_river2 | plot_river2 |
| read.readcount | read readcount output with correct column names |
| RivPlot | River Plots |
| tree2pats | Tree to Pattern |
| type_context | Retrieve context of base substitution types |
| UX | Calculating Uracilation index |
| UX_NC | Calculating Uracilation index |
| UX_TC | Calculating Uracilation index |
| UX_v2 | UX version2 |
| UX_v3 | UX version3 |
| UX_v4 | UX version4 |
| XDisplay | Set DISPLAY settings for X11 forwarding |
