get_mut_context_matrix: Get Mutation Context Matrix

In rayanramin/RamPack: Ramin's Package

Get Mutation Context Matrix

Description

from Grange objects that lists all the mutations. This is a wrapper function to use the modified mut_matrix_UI function This function also allows for assymetrical context to be generated

Usage

get_mut_context_matrix(input, context = "NNCN", UI = FALSE, custom_name = NULL)

Arguments

input	GRange object conatining the mutations
context	defines the extent for with the context of a mutation at C:G position is determined
UI	if set to TRUE, the UI values will be calculated instead of counting the mutations
custom_name	for when there is only one sample, you can set the name to be displayed

References

https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-018-0539-0

rayanramin/RamPack documentation built on Sept. 2, 2023, 1:20 a.m.