read.readcount: read readcount output with correct column names
In rayanramin/RamPack: Ramin's Package
View source: R/read.readcount.R
read.readcount R Documentation
read readcount output with correct column names
Description
use the folloing line to genereate readcount table:
$ bam-readcount -w0 -d 1000000000 -f ref.fa alignment.sorted.bam | awk -F ":|\t|=" 'BEGIN OFS = "\t"; print $1, $2, $3 , $4, $21 , $35, $49 , $63' > BRC.txt
Usage
read.readcount(X)
Arguments
Input
char. path to RC table
Examples
read.readcount("./path/to/RC.txt") -> RC
rayanramin/RamPack documentation built on Sept. 2, 2023, 1:20 a.m.
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View source: R/read.readcount.R
| read.readcount | R Documentation |
read readcount output with correct column names
Description
use the folloing line to genereate readcount table: $ bam-readcount -w0 -d 1000000000 -f ref.fa alignment.sorted.bam | awk -F ":|\t|=" 'BEGIN OFS = "\t"; print $1, $2, $3 , $4, $21 , $35, $49 , $63' > BRC.txt
Usage
read.readcount(X)
Arguments
Input |
char. path to RC table |
Examples
read.readcount("./path/to/RC.txt") -> RC
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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