UX: Calculating Uracilation index

In rayanramin/RamPack: Ramin's Package

Calculating Uracilation index

Description

input's column names should be:("Chr.","POS","REF","COV","A","C","G","T") output is a vector with Uracilation fraction values at C:G positions, the length of the vector is the same as the nrow of the input this is ~300 times faster than UX_TC for getting only CtoT_GtoA vector

Usage

UX(Input, context = "NC")

Arguments

Input	is readcount data.frame
context	the nucleotide context of cytosines; "NC" , "TC" , "WRCY"; Defaults to "NC" for all C:G positions.

Examples

UX(BRC) -> ui

rayanramin/RamPack documentation built on Sept. 2, 2023, 1:20 a.m.