CLD.total.plots: Time plots of model catch, landings, and discards by fishery
In rcheshire/FishGraph: Visualizations for fishery stock-assessment.

CLD.total.plots

R Documentation

Time plots of model catch, landings, and discards by fishery

Description

The function CLD.total.plots generates barplots of estimated catch, landings, and discards (in numbers and weight) over time. Each bar is subdivided by fishery.

Usage

CLD.total.plots(
  x,
  DataName = deparse(substitute(x)),
  draft = TRUE,
  graphics.type = NULL,
  use.color = TRUE,
  first.year = 0,
  units.CLD.n = x$info$units.numbers,
  units.CLD.w = x$info$units.biomass,
  CLD.n.references = NULL,
  CLD.w.references = NULL,
  plot.proportion = TRUE
)

Arguments

`x`	an R list with output from the assessment models.
`DataName`	string used in plot titles. Defaults to argument `x`.
`draft`	modifies plots for use in a report. When `FALSE` main titles are omitted.
`graphics.type`	a vector of graphics file types to which graphics are saved. When `NULL`, no plots are saved.
`use.color`	plots are made in grayscale when `FALSE`
`first.year`	An integer (e.g. 1960) indicating the first year for plots. The subsetting is done via row names of the matrices being plotted.
`units.CLD.n`	A text string (e.g. `"million fish"`) used in labeling Y-axis of plots of numbers caught, landed, or discarded.
`units.CLD.w`	A text string (e.g. `"t"`) used in labeling the Y-axis of plots of biomass caught, landed, or discarded.
`CLD.n.references`	A list of three character-string names that specify reference points in numbers, in order of catch, landings, and discards, to be included on numbers plots. Input NULL for none, e.g., CLD.w.references=list(NULL,"msy.num","Dmsy.num").
`CLD.w.references`	A list of three character-string names that specify reference points in biomass, in order of catch, landings, and discards, to be included on biomass plots. Input NULL for none, e.g., CLD.w.references=list(NULL,"msy", NULL).
`plot.proportion`	When `TRUE`, additional plots are made, scaled as proportions.