Phase.plots: Plots of fishing and spawning biomass status
In rcheshire/FishGraph: Visualizations for fishery stock-assessment.

Phase.plots

R Documentation

Plots of fishing and spawning biomass status

Description

The function Phase.plots provides plots of fishing status versus spawning biomass status.

Usage

Phase.plots(
  x,
  DataName = deparse(substitute(x)),
  draft = TRUE,
  graphics.type = NULL,
  use.color = TRUE,
  start.drop = 0,
  end.drop = 0,
  year.pos = 1,
  from.zero = TRUE,
  legend.pos = NULL,
  Xaxis.F = TRUE,
  F.series = "F.full",
  B.series = "SSB",
  F.B.references = list("Fmsy", "msst")
)

Arguments

`x`	an R list with output from the assessment models.
`DataName`	string used in plot titles. Defaults to argument `x`.
`draft`	modifies plots for use in a report. When `FALSE` main titles are omitted.
`graphics.type`	a vector of graphics file types to which graphics are saved. When `NULL`, no plots are saved.
`use.color`	plots are made in grayscale when `FALSE`.
`start.drop`	Number of years at the start of the data to be omitted from plots, as when a model includes an initialization period.
`end.drop`	Number of years at the end of data to be omitted from plots, as when a model includes a projection period.
`year.pos`	An integer (= 1, 2, 3, or 4) defining the position of text relative to points. The text indicates first and last years in the time series. A value of year.pos=0 turns off the text feature.
`from.zero`	When `TRUE`, the Y-axis of each plot starts at zero.
`legend.pos`	A text string compatible with the `legend` function of `R`. Defines the position of the legend (ex. "bottomright", "bottom", etc.). The default NULL places text on the plot itself.
`Xaxis.F`	When `TRUE`, F is plotted as the X axis, otherwise, B.
`F.series`	Character string specifying the name of the F metric to be plotted
`B.series`	Character string specifying the name of the B (or SSB) metric to be plotted
`F.B.references`	a list of two character-sting names, the first specifying the fishing reference point and the second the biomass reference point. Insert a value of NULL if reference points are not desired for plotting.