PerRec.plots: Per-recruit plots

In rcheshire/FishGraph: Visualizations for fishery stock-assessment.

Per-recruit plots

Description

The function PerRec.plots generates plots of quantities on a per-recruit basis as a function of fishing mortality rate F.

Usage

PerRec.plots(
  x,
  DataName = deparse(substitute(x)),
  draft = TRUE,
  graphics.type = NULL,
  use.color = TRUE,
  units.ypr = x$info$units.ypr,
  user.PR = NULL,
  user.lab = NULL,
  user.xmax = NULL,
  legend.pos = "topright",
  F.references = NULL
)

Arguments

x	an R list with output from the assessment models.
DataName	string used in plot titles. Defaults to argument x.
draft	modifies plots for use in a report. When FALSE main titles are omitted.
graphics.type	a vector of graphics file types to which graphics are saved. When NULL, no plots are saved.
use.color	plots are made in grayscale when FALSE
units.ypr	A character string (e.g. "pounds") used in labeling the plot of yield per recruit.
user.PR	A list whose elements are names of additional columns of x$pr.series to be plotted against F.
user.lab	A list of labels to be used as the y-axis label for the user supplied PR
user.xmax	A user specified maximum value for the x-axis of the plots
legend.pos	A text string compatible with the legend function of R. Defines the position of the legend (ex. "bottomright", "bottom", etc.)
F.references	A list of character-string vectors to specify reference points to appear on F plots.

Value

Graphics

Author(s)

M Prager

E Williams

K Shertzer

R Cheshire

K Purcell

Examples

PerRec.plots(gag)

rcheshire/FishGraph documentation built on Feb. 23, 2024, 11:27 a.m.