F.time.plots: Plots of fishing mortality rate over time
In rcheshire/FishGraph: Visualizations for fishery stock-assessment.

F.time.plots

R Documentation

Plots of fishing mortality rate over time

Description

The routine F.time.plots provides time plots of fishing mortality rate F over time. Plots are of absolute estimated F and F relative to various reference points. Through the argument F.references, arbitrary reference points can be included in plots, one by one or together.

Usage

F.time.plots(
  x,
  DataName = deparse(substitute(x)),
  draft = TRUE,
  start.drop = 0,
  graphics.type = NULL,
  use.color = TRUE,
  legend.pos = "topleft",
  F.references = NULL,
  F.additional = NULL
)

Arguments

`x`	an R list with output from the assessment models.
`DataName`	string used in plot titles. Defaults to argument `x`.
`draft`	modifies plots for use in a report. When `FALSE` main titles are omitted.
`start.drop`	Number of years at the start of the data to be omitted from plots, as when a model includes an initialization period.
`graphics.type`	a vector of graphics file types to which graphics are saved. When `NULL`, no plots are saved.
`use.color`	plots are made in grayscale when `FALSE`
`legend.pos`	A text string compatible with the `legend` function of `R`. Defines the position of the legend (ex. "bottomright", "bottom", etc.)
`F.references`	A list of character-string vectors to specify reference points to appear on F plots.
`F.additional`	A vector of character-string names specifying additional F metrics to be plotted. An extension of *.ratio indicates that the metric is a relative measure.