reactome_links-ReactomeAnalysisResult-method: ReactomeAnalysisResult - reactome_links

In reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

ReactomeAnalysisResult - reactome_links

Description

Displays detailed information about the result visualizations in Reactome.

Usage

## S4 method for signature 'ReactomeAnalysisResult'
reactome_links(x, print_result = TRUE, return_result = FALSE)

Arguments

x	ReactomeAnalysisResult.
print_result	If set to FALSE the links are not printed to the console.
return_result	If TRUE the available visualizations are returned as a list containing named vectors for every visualization. These vectors' have a url, name, and optionally a description slot.

Value

If return_result is set to TRUE, a vector of the available visualizations.

See Also

Other ReactomeAnalysisResult functions: get_result(), names,ReactomeAnalysisResult-method, open_reactome(), pathways(), plot_correlations(), plot_gsva_heatmap(), plot_gsva_pathway(), plot_heatmap(), plot_volcano(), result_types()

Examples

# Note: This function only works with a newly created result
# since the visualization links only stay active for 7 days

# load an example result
library(ReactomeGSA.data)
data(griss_melanoma_result)

# get the reactome link - this does only work
# with new results
reactome_links(griss_melanoma_result)

reactome/ReactomeGSA documentation built on Nov. 13, 2023, 11:13 p.m.