set_method: set_method

In reactome/ReactomeGSA: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis

set_method

Description

Set the analysis method used by the ReactomeAnalysisRequest

Usage

set_method(request, method, ...)

Arguments

request	The ReactomeAnalysisRequest to adjust
method	The name of the method to use. Use get_reactome_methods to retrieve all available methods
...	Additional parameters passed to specific implementations

Value

The ReactomeAnalysisRequest with the adapted method

Examples

# create a request using Camera as an analysis
data(griss_melanoma_proteomics)
library(methods)

my_request <- ReactomeAnalysisRequest(method = "Camera")

print(my_request)

# change the method to ssGSEA
my_request <- set_method(my_request, "ssGSEA")

print(my_request)

reactome/ReactomeGSA documentation built on Nov. 13, 2023, 11:13 p.m.