API for redsnic/CIMICE
CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution
| Global functions | |
|---|---|
| CIMICE | Man page |
| annotate_mutational_matrix | Man page Source code |
| binary_radix_sort | Man page Source code |
| build_subset_graph | Man page |
| build_topology_subset | Man page |
| chunk_reader | Man page Source code |
| compact_dataset | Man page Source code |
| computeDWNW | Man page Source code |
| computeDWNW_aux | Man page Source code |
| computeUPW | Man page Source code |
| computeUPW_aux | Man page Source code |
| compute_weights_default | Man page Source code |
| corrplot_from_mutational_matrix | Man page Source code |
| corrplot_genes | Man page |
| corrplot_samples | Man page |
| dataset_preprocessing | Man page Source code |
| dataset_preprocessing_population | Man page Source code |
| draw_ggraph | Man page Source code |
| draw_networkD3 | Man page |
| draw_visNetwork | Man page |
| example_dataset | Man page Source code |
| example_dataset_withFreqs | Man page Source code |
| finalize_generator | Man page |
| fix_clonal_genotype | Man page |
| format_labels | Man page Source code |
| gene_mutations_hist | Man page Source code |
| get_no_of_children | Man page |
| graph_non_transitive_subset_topology | Man page Source code |
| make_dataset | Man page |
| make_generator_stub | Man page Source code |
| make_labels | Man page |
| normalizeDWNW | Man page Source code |
| normalizeUPW | Man page Source code |
| perturb_dataset | Man page |
| plot_generator | Man page |
| prepare_generator_edge_set_command | Man page |
| prepare_labels | Man page |
| quick_run | Man page Source code |
| read | Man page |
| read_CAPRI | Man page Source code |
| read_CAPRI_string | Man page Source code |
| read_CAPRIpop | Man page |
| read_CAPRIpop_string | Man page Source code |
| read_MAF | Man page Source code |
| read_matrix | Man page Source code |
| remove_transitive_edges | Man page |
| sample_mutations_hist | Man page Source code |
| select_genes_on_mutations | Man page Source code |
| select_samples_on_mutations | Man page Source code |
| set_generator_edges | Man page Source code |
| simulate_generator | Man page |
| to_dot | Man page |
| update_df | Man page |
