dataset_preprocessing: Run CIMICE preprocessing
In redsnic/CIMICE: CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution
dataset_preprocessing R Documentation
Run CIMICE preprocessing
Description
executes the preprocessing steps of CIMICE
Usage
dataset_preprocessing(dataset)
Arguments
dataset
a mutational matrix as a (sparse) matrix
Details
Preprocessing steps:
1) dataset is compacted
2) genotype frequencies are computed
3) labels are prepared
Value
a list containing the mutational matrix ("samples"),
the mutational frequencies of the genotypes ("freqs"),
the node labels ("labels") and finally the gene names ("genes")
Examples
require(dplyr)
example_dataset() %>% dataset_preprocessing
redsnic/CIMICE documentation built on March 30, 2022, 2:46 a.m.
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| dataset_preprocessing | R Documentation |
Run CIMICE preprocessing
Description
executes the preprocessing steps of CIMICE
Usage
dataset_preprocessing(dataset)
Arguments
dataset |
a mutational matrix as a (sparse) matrix |
Details
Preprocessing steps:
1) dataset is compacted
2) genotype frequencies are computed
3) labels are prepared
Value
a list containing the mutational matrix ("samples"), the mutational frequencies of the genotypes ("freqs"), the node labels ("labels") and finally the gene names ("genes")
Examples
require(dplyr) example_dataset() %>% dataset_preprocessing
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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