quick_run: Run CIMICE defaults

In redsnic/CIMICE: CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution

Run CIMICE defaults

Description

This function executes CIMICE analysis on a dataset using default settings.

Usage

quick_run(dataset, mode = "CAPRI")

Arguments

dataset	a mutational matrix as a (sparse) matrix
mode	indicates the used input format. Must be either "CAPRI" or "CAPRIpop"

Value

a list object representing the graph computed by CIMICE with the structure 'list(topology = g, weights = W, labels = labels, freqs=freqs)'

Examples

quick_run(example_dataset())

redsnic/CIMICE documentation built on March 30, 2022, 2:46 a.m.