CIMICE: CIMICE Package
In redsnic/CIMICE: CIMICE-R: (Markov) Chain Method to Inferr Cancer Evolution
CIMICE R Documentation
CIMICE Package
Description
R implementation of the CIMICE tool.
CIMICE is a tool in the field of tumor phylogenetics and
its goal is to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order to model tumor subtypes evolution.
The input of CIMICE is a Mutational Matrix, so a boolean matrix representing altered genes in a
collection of samples. These samples are assumed to be obtained with single-cell DNA analysis techniques and
the tool is specifically written to use the peculiarities of this data for the CMPC construction.
See 'https://github.com/redsnic/tumorEvolutionWithMarkovChains/tree/master/GenotypeEvolutionPaths' for the
original Java version of this tool.
Details
CIMICE-R: (Markov) Chain Method to Infer Cancer Evolution
Author(s)
Nicolò Rossi olocin.issor@gmail.com
redsnic/CIMICE documentation built on March 30, 2022, 2:46 a.m.
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| CIMICE | R Documentation |
CIMICE Package
Description
R implementation of the CIMICE tool. CIMICE is a tool in the field of tumor phylogenetics and its goal is to build a Markov Chain (called Cancer Progression Markov Chain, CPMC) in order to model tumor subtypes evolution. The input of CIMICE is a Mutational Matrix, so a boolean matrix representing altered genes in a collection of samples. These samples are assumed to be obtained with single-cell DNA analysis techniques and the tool is specifically written to use the peculiarities of this data for the CMPC construction. See 'https://github.com/redsnic/tumorEvolutionWithMarkovChains/tree/master/GenotypeEvolutionPaths' for the original Java version of this tool.
Details
CIMICE-R: (Markov) Chain Method to Infer Cancer Evolution
Author(s)
Nicolò Rossi olocin.issor@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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