| annotation-tools | Annotation Tools |
| annotation-utils | Handling Object Annotations |
| assayDataMelt | Melting Assay Data |
| available_tx_db | Lists Available Transcript Annotation Packages |
| bimap_lookup | Looking Up Keys in Identifier Maps |
| biocann_object | Retrieving Bioconductor Annotation Maps |
| biocann_orgdb | Bioconductor Organism Data and Packages |
| bioc-generic | Extracting Feature Names |
| biocIDs | 'is.idtype' tells if a given character vector contains valid... |
| bioc-utils | Generic Bioconductor Utilities |
| cbind_ExpressionSet | Combining ExpressionSet Objects |
| cbind.ExpressionSet | Combining Expression Matrices |
| checkSYMBOLS | Checks Gene Symbol Validity |
| compareFeatures | Compare Features Sets |
| convertAlias | Converts Gene Alias to Official Gene Symbols |
| df_append | Appending Columns to Data Frames |
| digestN | Computing a Short Digest String |
| ExpressionSet-compute | Numeric Computations on ExpressionSet objects |
| featureIsControl | Extracting Control Probes |
| flow_reference-set | Change Reference Populations in Flowcytometry Data |
| geneInfo | Simple Feature Annotation |
| idtype | Identifying Gene or Probe ID Type |
| idtype-test | Testing Identifier Types |
| intersect | Enhanced Subsetting for Matrix-like Data |
| is_logscale | Detect Log-transformed Data |
| melt.ExpressionSet | Melt an ExpressionSet for Use with ggplot |
| NAmap | Initialising a Mapping List |
| nuIDdecode | Convert nuID to Nucleotide Sequence |
| pVar | Retrieve Phenotypic Variable from Data |
| read.fcs | Read All FCS Files in a Directory |
| samFDR | Compute Permutation-based FDR as in SAM |
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