melt.ExpressionSet: Melt an ExpressionSet for Use with ggplot

In renozao/xbioc: Extra Base Functions for Bioconductor

Description

Melt the expression data of an ExpressionSet, also binding any corresponding phenotypic data.

Usage

## S3 method for class 'ExpressionSet'
melt(
  data,
  ...,
  pData = pData(data),
  na.rm = FALSE,
  value.name = "value",
  extra = list()
)

Arguments

data	an ExpressionSet object.
...	arguments passed to reshape2::melt.array. Named arguments, will result in separate variables in the returned data.frame.
pData	phenotypic data to attach to the result data.frame.
na.rm	Should NA values be removed from the data set? This will convert explicit missings to implicit missings.
value.name	name of variable used to store values
extra	list of other matrix-like data to melt and rbind.fill to the melted primary data.

renozao/xbioc documentation built on Sept. 3, 2020, 1:13 a.m.