RAW_NT | R Documentation |
RAW_NT
is a named vector of raw bytes allowing fast comparison of IUPAC
DNA nucleotide characters. A, C, G, and T are assigned single individual
bits, and the standard IUPAC characters are assigned bitwise combinations of
these. This way RAW_NT["A"] & RAW_NT["G"]
is zero, while
RAW_NT["A"] & RAW_NT["R"]
is nonzero. The gap characters - and . are
assigned one remaining bit, leaving 3 bits unspecified.
RAW_NT
An object of class raw
of length 17.
- TGCA A 0000 0001 01 C 0000 0010 02 G 0000 0100 04 T 0000 1000 08 R 0000 0101 05 Y 0000 1010 0A S 0000 0110 06 W 0000 1001 09 K 0000 1100 0C M 0000 0011 03 B 0000 1110 0E D 0000 1101 0D H 0000 1011 0B V 0000 0111 07 N 0000 1111 0F - 0001 0000 10 . 0001 0000 10
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