Man pages for ressy/srahelper
SRA Helper
| biosamples | NCBI BioSamples |
| blank | Check for blank cells |
| BLANK_TYPES | BioSample empty field values |
| build_biosamples_from_template | Create BioSamples Table |
| build_metadata | Create blank metadata |
| build_sra_submission | Create BioSamples Attributes and SRA Metadata Tables |
| check_uniqueness | Check sample uniqueness from metadata |
| chunk_submission | Chunk up submission data frames |
| datemunge | Convert date text strings into YYY-MM-DD |
| download_biosample_attributes | Download BioSample Attributes XML |
| download_biosample_packages | Download BioSample Package info XML |
| download_metadata | Download Library Metadata Template |
| download_template | Download BioSample Template |
| dump_metadata | Download BioSample Metadata |
| field_descriptions | Get BioSample field descriptions |
| fill_blanks | Fill blanks with NCBI-allowed keyword |
| fill_from_columns | Fill in columns from reference |
| FIXED_VOCABULARY | Metadata fields with restricted values |
| has_zero_seqs | Report files containing no sequences |
| HTTP_SRV | NCBI server hostnames |
| list_templates | List installed template files |
| list_template_types | List template types |
| process_fixed_vocab | Create factors for known fields with fixed vocabulary |
| read_biosample_attributes | Read BioSample attributes list from file |
| read_biosample_packages | Read BioSample package information from file |
| read_template | Read table template |
| seqdata | Sequence Data Functions |
| srahelper-package | SRA Helper |
| sra_metadata | NCBI SRA Metadata |
| sra_submission | NCBI SRA Submissions |
| tables | NCBI Metadata Tables |
| templates | NCBI Submission Templates |
| tidy_optional_fields | Remove blank optional fields |
| validate_fields | Check metadata fields for problems |
| validate_sra_submission | Check both SRA submission spreadsheets for problems |
| write_biosamples | Write BioSample attributes or metadata to disk |
| write_sra_submission | Write SRA submission spreadsheets to disk |
| write_table | Read and write metadata to disk |
