check_uniqueness: Check sample uniqueness from metadata
In ressy/srahelper: SRA Helper
Description
Usage
Arguments
Value
Description
Per NCBI's rules: "You should have one BioSample for each specimen, and each
of your BioSamples must have differentiating information (excluding sample
name, title, bioproject accession and description). This check was
implemented to encourage submitters to include distinguishing information in
their samples. If the distinguishing information is in the sample name, title
or description, please recode it into an appropriate attribute, either one of
the predefined attributes or a custom attribute you define. If it is
necessary to represent true biological replicates as separate BioSamples, you
might add an 'aliquot' or 'replicate' attribute, e.g., 'replicate =
biological replicate 1', as appropriate. Note that multiple assay types,
e.g., RNA-seq and ChIP-seq data may reference the same BioSample if
appropriate."
Usage
1
Arguments
data
data frame of BioSample attributes
Value
factor with levels corresponding to unique rows after excluding
certain columns.
ressy/srahelper documentation built on May 29, 2019, 11:03 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Per NCBI's rules: "You should have one BioSample for each specimen, and each of your BioSamples must have differentiating information (excluding sample name, title, bioproject accession and description). This check was implemented to encourage submitters to include distinguishing information in their samples. If the distinguishing information is in the sample name, title or description, please recode it into an appropriate attribute, either one of the predefined attributes or a custom attribute you define. If it is necessary to represent true biological replicates as separate BioSamples, you might add an 'aliquot' or 'replicate' attribute, e.g., 'replicate = biological replicate 1', as appropriate. Note that multiple assay types, e.g., RNA-seq and ChIP-seq data may reference the same BioSample if appropriate."
Usage
1 |
Arguments
data |
data frame of BioSample attributes |
Value
factor with levels corresponding to unique rows after excluding certain columns.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.