Man pages for richardsprague/actino
Phyloseq utilities for personal microbiome
| convert_json_files_to_csv | Convert to CSV all uBiome JSON files in a directory. |
| dataframe_at_rank | Dataframe at a specific rank |
| experiment_to_phyloseq | convert a uBiome experiment dataframe and mapping file to a... |
| full_taxa | given a row taxaRow in df, return a character vector showing... |
| join_all_ubiome_files | returns a big dataframe joining all tax_names from a list of... |
| join_all_ubiome_files_full | returns a big dataframe joining all tax_names from a list of... |
| just_json_files_in | Just JSON files in a directory |
| kombucha.all_ranks | microbiome data available to ub.phyloseq |
| kombucha.csv | microbiome data available to ub.phyloseq |
| kombucha.genus | microbiome data available to ub.phyloseq |
| matrix_at_rank | Matrix version of a dataframe at a specific rank |
| phyloseq_from_JSON | Make Phyloseq object from JSON files |
| phyloseq_from_JSON_at_rank | return a valid Phyloseq object created from the JSON files in... |
| read_ubiome_json | Read a uBiome JSON file into a dataframe, returning only the... |
| read_ubiome_json_full | Read a uBiome JSON file into a dataframe |
| samples_as_column_dataframe | Turn a dataframe into a format that Phyloseq likes |
| tax_abbrev | returns the abbreviated character form of the character... |
| tax_rank_of_full_taxa | find tax_rank for a given full taxa |
