experiment_to_phyloseq: convert a uBiome experiment dataframe and mapping file to a...
In richardsprague/actino: Phyloseq utilities for personal microbiome
Description
Usage
Arguments
Value
Examples
Description
Make a valid Phyloseq object out of a uBiome dataframe and a map file
Usage
1
experiment_to_phyloseq(experiment.df, mapfile, rank = "genus")
Arguments
experiment.df
dataframe representation of a uBiome experiment. Rows are unique ssrs.
mapfile
a dataframe with column 'ssr'
rank
(not used currently – just assumes everything is always just genus)
Value
a Phyloseq object
Examples
1
2
simple.df <- data.frame(tax_name=c("taxa1"),"1234"=c(2352))
simple.map <- data.frame(ssr=c(1234))
richardsprague/actino documentation built on Dec. 13, 2021, 6:12 a.m.
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Description Usage Arguments Value Examples
Description
Make a valid Phyloseq object out of a uBiome dataframe and a map file
Usage
1 | experiment_to_phyloseq(experiment.df, mapfile, rank = "genus")
|
Arguments
experiment.df |
dataframe representation of a uBiome experiment. Rows are unique ssrs. |
mapfile |
a dataframe with column 'ssr' |
rank |
(not used currently – just assumes everything is always just genus) |
Value
a Phyloseq object
Examples
1 2 | simple.df <- data.frame(tax_name=c("taxa1"),"1234"=c(2352))
simple.map <- data.frame(ssr=c(1234))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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