join_all_ubiome_files: returns a big dataframe joining all tax_names from a list of...
In richardsprague/actino: Phyloseq utilities for personal microbiome
Description
Usage
Arguments
Value
Description
returns a big dataframe joining all tax_names from a list of JSON files
Usage
1
join_all_ubiome_files(flist, tax_rank = "genus", count.normalized = FALSE)
Arguments
flist
list of file pathnames, each pointing to a uBiome JSON file
tax_rank
taxonomic rank to read. Default is "genus"
count.normalized
use the count_norm field instead of raw read numbers (default is FALSE)
Value
data frame where first col is all taxa names, other cols are samples
richardsprague/actino documentation built on Dec. 13, 2021, 6:12 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
returns a big dataframe joining all tax_names from a list of JSON files
Usage
1 | join_all_ubiome_files(flist, tax_rank = "genus", count.normalized = FALSE)
|
Arguments
flist |
list of file pathnames, each pointing to a uBiome JSON file |
tax_rank |
taxonomic rank to read. Default is "genus" |
count.normalized |
use the count_norm field instead of raw read numbers (default is FALSE) |
Value
data frame where first col is all taxa names, other cols are samples
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.