phyloseq_from_JSON: Make Phyloseq object from JSON files
In richardsprague/actino: Phyloseq utilities for personal microbiome
Description
Usage
Arguments
Value
Description
return a valid Phyloseq object created from the JSON files in flist and an Excel formatted mapfile
Usage
1
phyloseq_from_JSON(flist, mapfile, count.normalized = FALSE)
Arguments
flist
character vector of file names
mapfile
XLSX filename that contains mapping info for the same SSRS in flist
count.normalized
use the count_norm field instead of raw read numbers (default is FALSE)
Value
valid Phyloseq object
richardsprague/actino documentation built on Dec. 13, 2021, 6:12 a.m.
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Description Usage Arguments Value
Description
return a valid Phyloseq object created from the JSON files in flist and an Excel formatted mapfile
Usage
1 | phyloseq_from_JSON(flist, mapfile, count.normalized = FALSE)
|
Arguments
flist |
character vector of file names |
mapfile |
XLSX filename that contains mapping info for the same SSRS in flist |
count.normalized |
use the count_norm field instead of raw read numbers (default is FALSE) |
Value
valid Phyloseq object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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