phyloseq_from_JSON_at_rank: return a valid Phyloseq object created from the JSON files in...
In richardsprague/actino: Phyloseq utilities for personal microbiome
Description
Usage
Arguments
Value
Description
return a valid Phyloseq object created from the JSON files in flist and an Excel formatted mapfile
Usage
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phyloseq_from_JSON_at_rank(
flist,
mapfile,
rank = "genus",
count.normalized = FALSE
)
Arguments
flist
character vector of file names
mapfile
XLSX filename that contains mapping info for the same SSRS in flist
rank
taxonomical rank (generally "genus" or "family" or "species")
count.normalized
use the count_norm field instead of raw read numbers (default is FALSE)
Value
valid Phyloseq object
richardsprague/actino documentation built on Dec. 13, 2021, 6:12 a.m.
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Description Usage Arguments Value
Description
return a valid Phyloseq object created from the JSON files in flist and an Excel formatted mapfile
Usage
1 2 3 4 5 6 | phyloseq_from_JSON_at_rank(
flist,
mapfile,
rank = "genus",
count.normalized = FALSE
)
|
Arguments
flist |
character vector of file names |
mapfile |
XLSX filename that contains mapping info for the same SSRS in flist |
rank |
taxonomical rank (generally "genus" or "family" or "species") |
count.normalized |
use the count_norm field instead of raw read numbers (default is FALSE) |
Value
valid Phyloseq object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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